Subcellular mRNA localization patterns across tissues resolved with spatial transcriptomics

A spatial transcriptomics atlas of live donors reveals unique zonation patterns in the healthy human liver

Transcriptomics of upper gastro-intestinal fluids can diagnose pancreatic ductal adenocarcinoma

Spatial Rewiring of Enterocyte Identity in Celiac Disease

Transcriptomic profiling of shed cells enables spatial mapping of cellular turnover in human organs

Stool shed cell transcriptomics mirrors tumor biology and enables colorectal cancer diagnosis

Intracellular polarization of RNAs and proteins in the human small intestinal epithelium

A spatial expression atlas of the adult human proximal small intestine

cellanneal: A User-Friendly Deconvolution Software for Omics Data

The cellular states and fates of shed intestinal cells

Single-cell atlas of the human neonatal small intestine affected by necrotizing enterocolitis

Distal fecal wash host transcriptomics identifies inflammation throughout the colon and terminal ileum

A spatiotemporally resolved single-cell atlas of the Plasmodium liver stage

The spatiotemporal program of zonal liver regeneration following acute injury

Host transcriptome signatures in human faecal-washes predict histological remission in patients with IBD

Spatial discordances between mRNAs and proteins in the intestinal epithelium

Insulin is expressed by enteroendocrine cells during human fetal development

Spatial gene expression maps of the intestinal lymphoid follicle and associated epithelium identify zonated expression programs

Clump sequencing exposes the spatial expression programs of intestinal secretory cells

Space-time logic of liver gene expression at sub-lobular scale

A single cell atlas of the human liver tumor microenvironment

Liver Zonation

Zonation of Pancreatic Acinar Cells in Diabetic Mice

Lgr5+ telocytes are a signaling source at the intestinal villus tip

Spatial sorting enables comprehensive characterization of liver zonation

Spatial heterogeneity in the mammalian liver

Transcriptional heterogeneity of beta cells in the intact pancreas

Single molecule approaches for studying gene regulation in metabolic tissues

Spatial Reconstruction of Single Enterocytes Uncovers Broad Zonation along the Intestinal Villus Axis

Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells

Design principles of the paradoxical feedback between pancreatic alpha and beta cells

Global mRNA polarization

Review – Spatial transcriptomics: paving the way for tissue-level systems biology

Single-cell spatial reconstruction reveals global division of labour in the mammalian liver

Early commitment and robust differentiation in colonic crypts

Dynamic zonation of liver polyploidy

Bursting through the cell cycle

Nuclear Retention of mRNA in Mammalian Tissues

Single Molecule approaches

Bursty Gene Expression in the Intact Mammalian Liver

Optimality in the development of intestinal crypts

Single molecule transcript counting of stem cell markers in the mouse intestine

Validating transcripts with probes and imaging technology

Cell lineage analysis of the mammalian female germline

Overlapping codes within protein-coding sequences

Invariant Distribution of Promoter Activities in Escherichia coli

Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code

Population mixture model for nonlinear telomere dynamics

The genetic code is nearly optimal

Coding limits on the number of transcription factors

Recurring harmonic walks and network motifs in Western music

Subgraphs and network motifs in geometric networks

Coarse-graining and self-dissimilarity of complex networks

Subgraphs in random networks