SHALEV ITZKOVITZ LAB
SYSTEMS BIOLOGY OF
MAMMALIAN TISSUES
Resources
A spatial transcriptomics atlas of healthy human liver
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(Yakubovsky et al., BioRxiv 2025)
A spatial expression atlas of the adult human proximal small intestine
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(Harnik et al.,Nature. 2024)
Spatiotemporal atlas of Plasmodium liver stage
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(Afriat et al., Nature 2022)
Single cell atlas of the human fetal and neonatal small intestine
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(Egozi et al., Nature Medicine 2021)
Spatio-temporal atlas of mouse liver zonal regeneration
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(Ben-Moshe et al., Cell Stem Cell. 2022)
Enterocyte protein zonation
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(Harnik et al., Nat. Metabol. 2021)
cellanneal deconvolution software for Windows
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(Buchauer and Itzkovitz, arXiv, 2021) *initial loading may take a minute*
cellanneal deconvolution software for MacOS
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(Buchauer and Itzkovitz, arXiv, 2021) *initial loading may take a minute*
Human liver cell atlas
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(Massalha et al., Mol. Sys. Biol. 2020) *refresh the page after a minute if not loading*
Human and mouse hepatocyte zonation browser
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(Massalha et al., Mol. Sys. Biol. 2020)
Zonation of spatially sorted hepatocyte proteins and microRNAs
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(Ben-Moshe et al., Nat. Metabol. 2019)
Intestinal secretory cell zonation
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(Manco et al., Nat. Commun. 2021)
Enterocyte zonation
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(Moor et al., Cell 2018)
Liver endothelial cell zonation
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(Bahar Halpern et al., Nat. Biotechnol. 2018)
Nuclear and cytoplasmic mRNA counts in hepatocytes and beta cells
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(Bahar Halpern et al., Cell Reports 2015)
Intracellular apical-basal mRNA polarization in the intestinal epithelium
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(Moor et al., Science 2017)
Hepatocyte zonation
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(Bahar Halpern et al., Nature 2017)
